scverse/scanpy

scanpy

✅ Recently maintained

Single-cell analysis in Python. Scales to >100M cells.

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Python · BSD-3-Clause · Last push 2026-10-30

Official repository & installation ↗
machine-learningdata-sciencevisualize-datatranscriptomicsbioinformaticsscanpyanndatapythonscverse

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Get the project

git clone https://github.com/scverse/scanpy.git

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